Basic Information
Locus ID:
gene-LOC132599446
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
lysM domain receptor-like kinase 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 1277269 | 1279477 | + | gene-LOC132599446 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.66 | 68,761.75 Da | 37.74 | 91.23 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 378 | 568 | 1.6E-25 | IPR001245 |
| Pfam | PF01476 | LysM domain | 189 | 226 | 0.12 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 343 | 622 | 6.26E-44 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 332 | 429 | 2.8E-11 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 431 | 626 | 3.8E-37 | - |
| ProSiteProfiles | PS51782 | LysM domain profile. | 182 | 226 | 8.809777 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 296 | 625 | 22.930307 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 307 | 329 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_006340406.2 | PREDICTED: lysM domain receptor-like kinase 4 [Solanum tuberosum] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | K4DAB9 | Protein LYK5-like OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg18800, jg18801, jg8243 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30058330, pistato.v30140100 |
| Apiaceae | Apium graveolens | 2 | Ag5G00714, Ag6G02262 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G010430 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103695735 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1584.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri10G17600, Ftri12G19165 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00014588 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_12_RagTag.389 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-24355, nbisL1-mrna-24447 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-13610 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-19655 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000027l.147 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18995 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-11876 |
| Salicaceae | Populus euphratica | 4 | populus_peu28725, populus_peu28732, populus_peu28741 ... |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132599446, gene-LOC132600290 |
| Solanaceae | Solanum chilense | 1 | SOLCI003959800 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107004454 |