Basic Information
Locus ID:
gene-LOC132599329
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 135985272 | 135989431 | - | gene-LOC132599329 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.73 | 45,496.98 Da | 36.57 | 79.78 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 251 | 288 | 0.16 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 19 | 87 | 1.9E-24 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 353 | 388 | 2.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 294 | 332 | 1.2E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 245 | 0.0058 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 163 | 196 | 0.17 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 105 | 390 | 6.54E-50 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 3 | 403 | 6.7E-128 | IPR015943 |
| SMART | SM00320 | WD40_4 | 292 | 332 | 2.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 156 | 196 | 1.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 248 | 288 | 0.0044 | IPR001680 |
| SMART | SM00320 | WD40_4 | 205 | 245 | 9.5E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 349 | 389 | 0.0014 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 299 | 334 | 12.613797 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 163 | 197 | 11.109979 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 299 | 334 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 163 | 197 | 9.309238 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 212 | 254 | 11.44416 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 356 | 390 | 9.271977 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 212 | 250 | 8.676514 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 319 | 333 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 183 | 197 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 275 | 289 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 183 | 197 | 6.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 319 | 333 | 6.2E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_016539964.2 | WD-40 repeat-containing protein MSI2 [Capsicum annuum] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G3AUE9 | WD-40 repeat-containing protein MSI1 OS=Capsicum chinense OX=80379 GN=BC332_33233 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology