Basic Information
Locus ID:
gene-LOC132599324
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 135856786 | 135868999 | + | gene-LOC132599324 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.83 | 202,040.67 Da | 46.72 | 83.94 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 1469 | 1879 | 6.89725E-125 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1517 | 1884 | 8.9E-81 | IPR000569 |
| SUPERFAMILY | SSF48371 | ARM repeat | 186 | 654 | 4.94E-42 | IPR016024 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1461 | 1877 | 4.58E-97 | IPR035983 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1409 | 1646 | 1.2E-45 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 538 | 659 | 2.1E-5 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 175 | 493 | 1.6E-51 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1755 | 1882 | 4.2E-33 | - |
| SMART | SM00119 | hect_3 | 1480 | 1884 | 2.1E-87 | IPR000569 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 228 | 256 | 8.8724 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1493 | 1884 | 59.171982 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1824 | 1840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1273 | 1305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 95 | 124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1192 | 1212 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 1161 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1281 | 1303 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 536 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1824 | 1843 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1072 | 1108 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 658 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1052 | 1071 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 688 | 720 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 973 | 1014 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_006359694.1 | PREDICTED: E3 ubiquitin-protein ligase UPL3 [Solanum tuberosum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G2Y2V7 | HECT-type E3 ubiquitin transferase OS=Capsicum annuum OX=4072 GN=LOC107840566 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology