Basic Information
Locus ID:
gene-LOC132599207
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 134068307 | 134074729 | + | gene-LOC132599207 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.64 | 25,194.08 Da | 60.53 | 55.25 | -0.79 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00628 | PHD-finger | 142 | 190 | 6.0E-10 | IPR019787 |
| Pfam | PF01426 | BAH domain | 23 | 137 | 1.2E-22 | IPR001025 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 196 | 2.02E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 207 | 3.1E-21 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 3 | 134 | 6.7E-30 | IPR043151 |
| SMART | SM00439 | BAH_4 | 22 | 138 | 1.5E-41 | IPR001025 |
| SMART | SM00249 | PHD_3 | 142 | 189 | 7.1E-8 | IPR001965 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 22 | 138 | 23.297022 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 140 | 191 | 9.2408 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 143 | 188 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 217 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_004230951.1 | chromatin remodeling protein EBS [Solanum lycopersicum] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A6N2CDS5 | Chromatin remodeling protein SHL-like OS=Solanum chilense OX=4083 GN=EJD97_025150 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology