Basic Information
Locus ID:
gene-LOC132599144
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
zinc-RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 132932122 | 132934813 | - | gene-LOC132599144 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.07 | 27,124.67 Da | 38.79 | 81.52 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 50 | 94 | 7.78262E-31 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 50 | 97 | 2.7E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 44 | 105 | 6.7E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 35 | 106 | 2.5E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 52 | 92 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 52 | 93 | 13.064645 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 67 | 76 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_006365504.1 | PREDICTED: RING finger protein 5-like isoform X1 [Solanum tuberosum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | M1CD08 | RING-type E3 ubiquitin transferase OS=Solanum tuberosum OX=4113 GN=102594316 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology