Basic Information
Locus ID:
gene-LOC132598951
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 130186373 | 130193104 | + | gene-LOC132598951 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.53 | 69,177.19 Da | 35.24 | 88.36 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00651 | BTB/POZ domain | 29 | 120 | 5.5E-7 | IPR000210 |
| Pfam | PF03000 | NPH3 family | 212 | 465 | 1.8E-87 | IPR027356 |
| SUPERFAMILY | SSF54695 | POZ domain | 16 | 118 | 1.65E-17 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 15 | 122 | 1.2E-12 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 31 | 99 | 9.785631 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 212 | 489 | 86.299301 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 547 | 568 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 591 | 616 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 509 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 495 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 628 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_049351266.1 | BTB/POZ domain-containing protein NPY2 [Solanum verrucosum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1U8DWP3 | BTB/POZ domain-containing protein NPY2 OS=Capsicum annuum OX=4072 GN=LOC107840186 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology