Basic Information
Locus ID:
gene-LOC132598697
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 126130022 | 126135178 | - | gene-LOC132598697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 38,650.78 Da | 37.22 | 89.64 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02243 | cupin_11S_legumin_C | 201 | 356 | 2.56928E-55 | - |
| CDD | cd02242 | cupin_11S_legumin_N | 3 | 177 | 6.58256E-58 | - |
| Pfam | PF00190 | Cupin | 193 | 339 | 5.3E-17 | IPR006045 |
| Pfam | PF00190 | Cupin | 21 | 155 | 1.0E-17 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 22 | 346 | 1.81E-32 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 195 | 360 | 8.5E-37 | IPR014710 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 11 | 180 | 6.3E-30 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 18 | 160 | 3.9E-14 | IPR006045 |
| SMART | SM00835 | Cupin_1_3 | 192 | 342 | 2.6E-17 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 296 | 314 | 1.9E-6 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 213 | 233 | 1.9E-6 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 260 | 276 | 1.9E-6 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 278 | 293 | 1.9E-6 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G28680.1 | RmlC-like cupins superfamily protein. | 0 |
| RefSeq | XP_027773942.1 | 13S globulin seed storage protein 2-like isoform X1 [Solanum pennellii] | 0 |
| TrEMBL | M1C704 | Globulin OS=Solanum tuberosum OX=4113 GN=102601158 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology