Basic Information
Locus ID:
gene-LOC132598678
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
RQC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 125880812 | 125895530 | + | gene-LOC132598678 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.22 | 132,611.31 Da | 42.64 | 77.29 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 647 | 779 | 2.40618E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 447 | 646 | 2.84928E-103 | - |
| Pfam | PF00570 | HRDC domain | 1028 | 1096 | 4.5E-15 | IPR002121 |
| Pfam | PF09382 | RQC domain | 870 | 985 | 1.5E-21 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 458 | 626 | 2.6E-18 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 781 | 863 | 1.7E-15 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 663 | 769 | 6.1E-17 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 279 | 788 | 1.89E-42 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 1026 | 1102 | 2.18E-14 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 645 | 912 | 7.77E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 870 | 981 | 1.1E-19 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 647 | 866 | 1.4E-66 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 1020 | 1108 | 6.3E-22 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 420 | 646 | 2.1E-92 | IPR027417 |
| SMART | SM00341 | hrdc7 | 1024 | 1106 | 1.5E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 872 | 983 | 7.7E-27 | IPR018982 |
| SMART | SM00490 | helicmild6 | 689 | 770 | 1.1E-27 | IPR001650 |
| SMART | SM00487 | ultradead3 | 452 | 655 | 1.0E-32 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 448 | 923 | 2.5E-170 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 464 | 639 | 22.203648 | IPR014001 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 679 | 721 | 10.056093 | IPR001763 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 664 | 825 | 19.237816 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 1024 | 1106 | 17.608118 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 578 | 587 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1123 | 1138 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1139 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1155 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 988 | 1021 | - | - |
| Coils | Coil | Coil | 312 | 332 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_006349359.1 | PREDICTED: ATP-dependent DNA helicase Q-like 4A isoform X1 [Solanum tuberosum] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0V0IY56 | DNA helicase (Fragment) OS=Solanum chacoense OX=4108 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology