Basic Information
Locus ID:
gene-LOC132598489
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 122512957 | 122516343 | - | gene-LOC132598489 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.16 | 53,976.33 Da | 51.42 | 81.49 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 93 | 175 | 1.2E-8 | IPR000743 |
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 227 | 443 | 1.2E-76 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 50 | 478 | 1.21E-125 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 47 | 471 | 1.3E-118 | IPR012334 |
| SMART | SM00710 | pbh1 | 283 | 304 | 9.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 306 | 326 | 10000.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 233 | 282 | 1600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 336 | 357 | 3.0 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 313 | 326 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_049412472.1 | polygalacturonase At1g48100-like isoform X2 [Solanum stenotomum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6N2BSG2 | Polygalacturonase OS=Solanum chilense OX=4083 GN=EJD97_004908 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology