Basic Information
Locus ID:
gene-LOC132598458
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 155108708 | 155122404 | + | gene-LOC132598458 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 103,133.33 Da | 31.42 | 88.83 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 17 | 297 | 3.88248E-69 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 133 | 171 | 1.3E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 91 | 127 | 7.3E-6 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 177 | 215 | 4.8E-6 | IPR001680 |
| Pfam | PF04053 | Coatomer WD associated region | 319 | 763 | 4.5E-164 | IPR006692 |
| Pfam | PF00400 | WD domain, G-beta repeat | 220 | 256 | 2.0E-9 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 3 | 297 | 3.5E-79 | IPR036322 |
| SUPERFAMILY | SSF101898 | NHL repeat | 221 | 492 | 1.78E-20 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 300 | 1.3E-113 | IPR015943 |
| Gene3D | G3DSA:1.25.40.470 | - | 590 | 798 | 4.8E-83 | - |
| SMART | SM00320 | WD40_4 | 174 | 215 | 5.8E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 88 | 127 | 8.5E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 46 | 85 | 5.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 131 | 171 | 2.6E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 4 | 43 | 0.63 | IPR001680 |
| SMART | SM00320 | WD40_4 | 218 | 257 | 1.9E-12 | IPR001680 |
| PIRSF | PIRSF005567 | Beta'-COP | 2 | 890 | 0.0 | IPR016453 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 181 | 224 | 11.912015 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 181 | 218 | 8.887423 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 95 | 127 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 95 | 127 | 10.601049 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 138 | 172 | 11.207411 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 225 | 256 | 12.868311 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 225 | 266 | 16.055872 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 138 | 180 | 13.649761 | IPR001680 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 244 | 258 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 158 | 172 | 2.2E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 202 | 216 | 2.2E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 913 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 866 | 885 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.1 | structural molecules. | 0 |
| RefSeq | XP_015168194.1 | PREDICTED: coatomer subunit beta'-2 isoform X2 [Solanum tuberosum] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6N2CDG4 | Coatomer subunit beta' OS=Solanum chilense OX=4083 GN=EJD97_004068 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology