Basic Information
Locus ID:
gene-LOC132598421
Species & Taxonomic ID:
Lycium barbarum & 112863
Genome Assembly:
GCF_019175385.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 121654112 | 121659993 | + | gene-LOC132598421 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 70,716.83 Da | 49.89 | 80.27 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 425 | 558 | 3.04151E-60 | - |
| CDD | cd17920 | DEXHc_RecQ | 227 | 424 | 1.96037E-98 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 455 | 547 | 2.7E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 561 | 630 | 5.2E-14 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 235 | 403 | 3.2E-19 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 273 | 569 | 6.97E-53 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 425 | 633 | 4.5E-61 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 194 | 424 | 9.0E-84 | IPR027417 |
| SMART | SM00487 | ultradead3 | 229 | 433 | 4.7E-28 | IPR014001 |
| SMART | SM00490 | helicmild6 | 467 | 549 | 5.3E-24 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 227 | 632 | 3.7E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 241 | 417 | 20.374014 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 439 | 589 | 19.038643 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 356 | 365 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_049350738.1 | ATP-dependent DNA helicase Q-like 1 [Solanum verrucosum] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G2V7T8 | ATP-dependent DNA helicase OS=Capsicum baccatum OX=33114 GN=CQW23_31317 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology