Basic Information
Locus ID:
gene-LOC120112947
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr13 | 9695938 | 9696537 | + | gene-LOC120112947 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 22,634.32 Da | 47.17 | 72.01 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 112 | 153 | 5.3E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 106 | 156 | 1.06E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 76 | 158 | 2.6E-12 | IPR013083 |
| SMART | SM00184 | ring_2 | 113 | 153 | 5.5E-4 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 113 | 153 | 11.146755 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 182 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 180 | 199 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18760.1 | Zinc finger, C3HC4 type (RING finger) family protein. | 0 |
| RefSeq | XP_038989093.1 | E3 ubiquitin-protein ligase RING1-like [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B9AZ02 | E3 ubiquitin-protein ligase RING1-like OS=Phoenix dactylifera OX=42345 GN=LOC120112947 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 3 | COCNU_02G014250, COCNU_16G006120, COCNU_16G006340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112947 |