Basic Information
Locus ID:
gene-LOC120112296
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 27440 | 39438 | + | gene-LOC120112296 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.49 | 95,568.59 Da | 54.77 | 80.01 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 631 | 669 | 0.001 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 718 | 753 | 0.033 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 79 | 308 | 6.46E-19 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 548 | 855 | 4.58E-49 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 522 | 859 | 2.4E-116 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 77 | 318 | 2.0E-23 | - |
| SMART | SM00320 | WD40_4 | 587 | 626 | 7.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 715 | 753 | 4.0E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 672 | 711 | 0.083 | IPR001680 |
| SMART | SM00320 | WD40_4 | 817 | 857 | 45.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 538 | 576 | 12.0 | IPR001680 |
| SMART | SM00220 | serkin_6 | 20 | 306 | 6.3E-4 | IPR000719 |
| SMART | SM00320 | WD40_4 | 629 | 669 | 8.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 762 | 801 | 11.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 636 | 678 | 11.510997 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 722 | 762 | 11.811761 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 722 | 756 | 9.625601 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 306 | 10.803336 | IPR000719 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 636 | 671 | 9.493783 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 656 | 670 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 740 | 754 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 613 | 627 | 8.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 656 | 670 | 8.9E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 740 | 754 | 8.9E-6 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 8 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 74 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 180 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_038987065.1 | protein SPA1-RELATED 4-like isoform X1 [Phoenix dactylifera] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9AL43 | protein SPA1-RELATED 4-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC120112296 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology