Basic Information
Locus ID:
gene-LOC120112090
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr10 | 14407782 | 14408435 | + | gene-LOC120112090 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.48 | 25,533.95 Da | 67.65 | 62.95 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 172 | 213 | 2.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 162 | 216 | 5.81E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 132 | 217 | 2.1E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 172 | 212 | 6.1E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 172 | 213 | 12.297489 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038986585.1 | RING-H2 finger protein ATL57-like [Phoenix dactylifera] | 0 |
| A8Y4B2 | E3 ubiquitin-protein ligase hrd-1 OS=Caenorhabditis briggsae OX=6238 GN=sel-11 PE=3 SV=2 | 0 | |
| TrEMBL | A0A8B9AJS0 | RING-H2 finger protein ATL57-like OS=Phoenix dactylifera OX=42345 GN=LOC120112090 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_02G014780 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120112090 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_04.1992.V1.1 |