Basic Information
Locus ID:
gene-LOC120110386
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1798439 | 1799215 | - | gene-LOC120110386 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.52 | 27,063.19 Da | 39.84 | 71.34 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 192 | 234 | 1.8E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 192 | 237 | 4.24E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 237 | 1.7E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 193 | 233 | 8.7E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 193 | 234 | 12.194218 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G52140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_038981139.1 | uncharacterized protein LOC120110386 [Phoenix dactylifera] | 0 |
| Q90ZT7 | E3 ubiquitin-protein ligase arkadia-A (Fragment) OS=Xenopus laevis OX=8355 GN=rnf111-a PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AD26 | uncharacterized protein LOC120110386 OS=Phoenix dactylifera OX=42345 GN=LOC120110386 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold011582G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120110386 |