Basic Information
Locus ID:
gene-LOC120110385
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1785880 | 1786749 | - | gene-LOC120110385 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.23 | 31,124.28 Da | 48.67 | 83.46 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 238 | 280 | 3.97905E-17 | - |
| Pfam | PF13639 | Ring finger domain | 238 | 280 | 9.9E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 230 | 284 | 3.06E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 217 | 286 | 4.0E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 239 | 279 | 3.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 239 | 280 | 12.076194 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038981138.1 | uncharacterized protein LOC120110385 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B9AB40 | uncharacterized protein LOC120110385 OS=Phoenix dactylifera OX=42345 GN=LOC120110385 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | scaffold011582G000020, scaffold011582G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120110385 |