halophFGD

Basic Information

Locus ID: gene-LOC120110273

Species & Taxonomic ID: Phoenix dactylifera & 42345

Genome Assembly: GCF_009389715.1

Short Name: PRP19

Description: generation of catalytic spliceosome for first transesterification step

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr3	16763762	16767114	-	gene-LOC120110273

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.69	11,268.52 Da	34.05	74.76	-0.33

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	54	88	1.5E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	21	89	2.32E-9	IPR036322
Gene3D	G3DSA:2.130.10.10	-	11	90	2.2E-10	IPR015943

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K10599 (pre-mRNA-processing factor 19 [EC:2.3.2.27])

Pathway:

ko03040 (Spliceosome) map03040 (Spliceosome) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G33340.1	MOS4-associated complex 3B. Encodes MAC3B, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity.
RefSeq	XP_038980709.1	pre-mRNA-processing factor 19 homolog 2-like [Phoenix dactylifera]
Swiss-Prot	O22785	Pre-mRNA-processing factor 19 homolog 2 OS=Arabidopsis thaliana OX=3702 GN=PRP19B PE=1 SV=3
TrEMBL	A0A8B9ABW8	Pre-mRNA-processing factor 19 OS=Phoenix dactylifera OX=42345 GN=LOC120110273 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Apiaceae	Apium graveolens	1	Ag10G00349
Arecaceae	Phoenix dactylifera	3	gene-LOC120103761, gene-LOC120108767, gene-LOC120110273
Poaceae	Zoysia macrostachya	1	Zma_g22755