Basic Information
Locus ID:
gene-LOC120110249
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 14740592 | 14742202 | - | gene-LOC120110249 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.73 | 12,534.38 Da | 44.92 | 80.97 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 59 | 94 | 2.1E-10 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 61 | 100 | 5.65E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 56 | 102 | 4.5E-14 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 69 | 94 | 9.258371 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G07960.2 | - | 0 |
| RefSeq | XP_038980622.1 | E3 ubiquitin-protein ligase RNF181-like [Phoenix dactylifera] | 0 |
| Q9SFB8 | Phosphatidylinositol 4-phosphate 5-kinase 6 OS=Arabidopsis thaliana OX=3702 GN=PIP5K6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9A4M8 | E3 ubiquitin-protein ligase RNF181-like OS=Phoenix dactylifera OX=42345 GN=LOC120110249 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_02G017950, COCNU_02G017960 |
| Arecaceae | Phoenix dactylifera | 7 | gene-LOC103700215, gene-LOC103700566, gene-LOC120110110 ... |