Basic Information
Locus ID:
gene-LOC120109152
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001864F | 2303 | 34433 | + | gene-LOC120109152 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 49,908.25 Da | 26.43 | 104.72 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 213 | 313 | 1.18665E-28 | - |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 34 | 195 | 3.9E-11 | IPR039010 |
| Pfam | PF00168 | C2 domain | 211 | 308 | 1.8E-23 | IPR000008 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 209 | 340 | 1.09E-28 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 205 | 367 | 1.4E-31 | IPR035892 |
| SMART | SM00239 | C2_3c | 212 | 310 | 5.1E-20 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 8 | 196 | 18.278908 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 194 | 313 | 20.55582 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 228 | 240 | 4.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 275 | 283 | 4.0E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 253 | 266 | 4.0E-5 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 468 | - | - |
| Coils | Coil | Coil | 346 | 366 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_038978828.1 | synaptotagmin-5-like, partial [Phoenix dactylifera] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9A4Q7 | synaptotagmin-5-like OS=Phoenix dactylifera OX=42345 GN=LOC120109152 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology