Basic Information
Locus ID:
gene-LOC120108767
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Short Name:
PRP19
Description:
generation of catalytic spliceosome for first transesterification step
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001541F | 35767 | 39165 | - | gene-LOC120108767 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.85 | 11,321.56 Da | 34.79 | 74.76 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 90 | 2.38E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 11 | 90 | 4.4E-10 | IPR015943 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04510.1 | MOS4-associated complex 3A. Encodes MAC3A, a U-box proteins with homology to the yeast and human E3 ubiquitin ligase Prp19. Associated with the MOS4-Associated Complex (MAC). Involved in plant innate immunity. | 0 |
| RefSeq | XP_038978409.1 | pre-mRNA-processing factor 19-like [Phoenix dactylifera] | 0 |
| Q9AV81 | Pre-mRNA-processing factor 19 OS=Oryza sativa subsp. japonica OX=39947 GN=PRP19 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9A539 | Pre-mRNA-processing factor 19 OS=Phoenix dactylifera OX=42345 GN=LOC120108767 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag10G00349 |
| Arecaceae | Phoenix dactylifera | 3 | gene-LOC120103761, gene-LOC120108767, gene-LOC120110273 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g22755 |