Basic Information
Locus ID:
gene-LOC120108727
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RNA polymerase II C-terminal domain phosphatase-like 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001517F | 3960 | 24017 | - | gene-LOC120108727 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.67 | 99,713.14 Da | 52.80 | 81.89 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 241 | 357 | 1.49235E-19 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 713 | 765 | 1.9E-4 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 247 | 355 | 8.7E-7 | IPR004274 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 708 | 774 | 2.48E-9 | - |
| SUPERFAMILY | SSF56784 | HAD-like | 126 | 362 | 2.61E-19 | IPR036412 |
| Gene3D | G3DSA:3.30.160.20 | - | 708 | 787 | 1.2E-6 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 127 | 388 | 2.0E-26 | IPR023214 |
| SMART | SM00358 | DRBM_3 | 710 | 774 | 7.9E-7 | IPR014720 |
| SMART | SM00577 | forpap2 | 192 | 366 | 2.3E-17 | IPR004274 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 709 | 775 | 10.484526 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 131 | 382 | 16.072672 | IPR004274 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 524 | 545 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21670.1 | C-terminal domain phosphatase-like 1. encodes a a novel transcriptional repressor harboring two double-stranded RNA-binding domains and a region homologous to the catalytic domain of RNA polymerase II C-terminal domain phosphatases found in yeast and in animals that regulate gene transcription. Protein exhibits innate phosphatase activity in vitro. Mutants exhibit hyperresponsiveness to ABA, cold, and NaCl. | 0 |
| RefSeq | XP_038978339.1 | RNA polymerase II C-terminal domain phosphatase-like 1 isoform X2 [Phoenix dactylifera] | 0 |
| Q5YDB6 | RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana OX=3702 GN=CPL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B9A4W6 | protein-serine/threonine phosphatase OS=Phoenix dactylifera OX=42345 GN=LOC120108727 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology