Basic Information
Locus ID:
gene-LOC120108368
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001296F | 52728 | 62291 | - | gene-LOC120108368 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.43 | 71,868.28 Da | 43.01 | 84.03 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 236 | 433 | 1.71965E-98 | - |
| CDD | cd18794 | SF2_C_RecQ | 434 | 567 | 5.61306E-62 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 245 | 414 | 2.1E-17 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 449 | 557 | 1.7E-15 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 570 | 639 | 9.3E-13 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 282 | 577 | 7.51E-52 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 203 | 433 | 1.6E-83 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 434 | 641 | 1.4E-58 | IPR027417 |
| SMART | SM00487 | ultradead3 | 238 | 442 | 8.2E-30 | IPR014001 |
| SMART | SM00490 | helicmild6 | 476 | 558 | 1.9E-22 | IPR001650 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 236 | 641 | 2.9E-152 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 250 | 426 | 22.329395 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 451 | 606 | 18.047741 | IPR001650 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 365 | 374 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 152 | 188 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_038977882.1 | ATP-dependent DNA helicase Q-like 1 [Phoenix dactylifera] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZWZ1 | ATP-dependent DNA helicase OS=Phoenix dactylifera OX=42345 GN=LOC120108368 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology