halophFGD

Basic Information

Locus ID: gene-LOC120108331

Species & Taxonomic ID: Phoenix dactylifera & 42345

Genome Assembly: GCF_009389715.1

Short Name: DDB1A

Description: DNA damage-binding protein

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
scaffold001278F	289	1965	+	gene-LOC120108331

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.73	32,412.60 Da	38.29	99.48	-0.20

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF03178	CPSF A subunit region	1	255	6.3E-66	IPR004871
Gene3D	G3DSA:1.10.150.910	-	201	286	1.4E-29	-
Gene3D	G3DSA:2.130.10.10	-	1	199	6.1E-68	IPR015943

Gene Ontology

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0005515 (protein binding)

Cellular Component:

GO:0005634 (nucleus)

KEGG Pathway

KO Term:

K10610 (DNA damage-binding protein 1)

Pathway:

ko03420 (Nucleotide excision repair) map03420 (Nucleotide excision repair) ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G05420.2	damaged DNA binding protein 1A. Structurally similar to damaged DNA binding proteins.DDB1a is part of a 350 KDa nuclear localized DET1 protein complex. This complex may physically interact with histone tails and while bound to chromatin- repress transcription of genes involved in photomorphogenesis.
RefSeq	XP_038977843.1	LOW QUALITY PROTEIN: DNA damage-binding protein 1a-like, partial [Phoenix dactylifera]
Swiss-Prot	Q9M0V3	DNA damage-binding protein 1a OS=Arabidopsis thaliana OX=3702 GN=DDB1A PE=1 SV=1
TrEMBL	A0A8B9A1Z8	LOW QUALITY PROTEIN: DNA damage-binding protein 1a-like OS=Phoenix dactylifera OX=42345 GN=LOC120108331 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg38772
Aizoaceae	Mesembryanthemum crystallinum	1	gene_640
Amaranthaceae	Atriplex hortensis	1	Ah016141
Amaranthaceae	Beta vulgaris	1	BVRB_8g187500
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg25694, Sbi_jg9530
Amaranthaceae	Salicornia europaea	1	Seu_jg19100
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00027443
Amaranthaceae	Suaeda glauca	2	Sgl44090, Sgl48857
Amaranthaceae	Chenopodium album	4	gene:ENSEOMG00000009240, gene:ENSEOMG00000010763 ... gene:ENSEOMG00000033513, gene:ENSEOMG00000045609
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.8AG0011040, CQ.Regalona.r1.8BG0012280
Anacardiaceae	Pistacia vera	1	pistato.v30075990
Apiaceae	Apium graveolens	1	Ag8G00741
Arecaceae	Cocos nucifera	3	COCNU_12G000350, scaffold000669G000040 ... scaffold000669G000050
Arecaceae	Phoenix dactylifera	3	gene-LOC120108331, gene-LOC120109131, gene-LOC120109791
Asparagaceae	Asparagus officinalis	1	AsparagusV1_10.1594.V1.1
Asteraceae	Flaveria trinervia	2	Ftri15G13765, Ftri18G24988
Brassicaceae	Arabidopsis thaliana	2	AT4G05420.1, AT4G21100.1
Brassicaceae	Eutrema salsugineum	2	Thhalv10024273m.g.v1.0, Thhalv10028374m.g.v1.0
Brassicaceae	Schrenkiella parvula	2	Sp6g03670.v2.2, Sp7g19180.v2.2
Brassicaceae	Brassica nigra	3	BniB03g022260.2N, BniB08g038640.2N, BniB08g046620.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0537
Casuarinaceae	Casuarina glauca	2	Cgl04G0633, Cgl04G0635
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno06g12740
Dunaliellaceae	Dunaliella salina	1	Dusal.0512s00003.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate02g41100
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG12.165
Plantaginaceae	Plantago ovata	2	Pov_00027850, Pov_00038547
Plumbaginaceae	Limonium bicolor	1	Lb4G24936
Poaceae	Echinochloa crus-galli	3	BH05.1203, CH01.2695, CH05.1505
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_5AG0361010, gene-QOZ80_5BG0409460
Poaceae	Hordeum vulgare	2	HORVU.MOREX.r3.1HG0094520.1, HORVU.MOREX.r3.3HG0268390.1
Poaceae	Lolium multiflorum	5	gene-QYE76_014993, gene-QYE76_014995, gene-QYE76_015567 ... gene-QYE76_048255, gene-QYE76_053494
Poaceae	Oryza coarctata	4	Oco01G013420, Oco02G013570, Oco09G018360, Oco10G018290
Poaceae	Oryza sativa	2	LOC_Os01g40320.1, LOC_Os05g51480.1
Poaceae	Paspalum vaginatum	1	gene-BS78_09G257900
Poaceae	Puccinellia tenuiflora	6	Pt_Chr0206315, Pt_Chr0505878, Pt_Chr0505880, Pt_Chr0505882 ... Pt_Chr0505885, Pt_Chr0603139
Poaceae	Sporobolus alterniflorus	5	Chr01G016330, Chr0G020280, Chr0G030030, Chr12G020430 ... Chr18G015900
Poaceae	Thinopyrum elongatum	4	Tel1E01G739100, Tel1E01G739300, Tel1E01G739500 ... Tel3E01G364700
Poaceae	Triticum dicoccoides	4	gene_TRIDC1AG064150, gene_TRIDC1BG073390 ... gene_TRIDC3AG031300, gene_TRIDC3BG035940
Poaceae	Triticum aestivum	5	TraesCS1B02G473400.1, TraesCS1D02G445700.1 ... TraesCS3A02G210100.2, TraesCS3B02G240600.1, TraesCSU02G002300.1
Poaceae	Zea mays	2	Zm00001eb297320_P004, Zm00001eb345240_P002
Poaceae	Zoysia japonica	4	nbis-gene-13528, nbis-gene-13529, nbis-gene-13531 ... nbis-gene-24702
Poaceae	Zoysia macrostachya	1	Zma_g28923
Portulacaceae	Portulaca oleracea	2	evm.TU.LG04.1142, evm.TU.LG05.1683
Posidoniaceae	Posidonia oceanica	1	gene.Posoc03g02890
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.947
Rhizophoraceae	Carallia pectinifolia	2	nbisL1-mrna-16722, nbisL1-mrna-16797
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-5827
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17253
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000025l.118
Rhizophoraceae	Kandelia obovata	1	Maker00012206
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-8647
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-9169
Salicaceae	Populus euphratica	1	populus_peu00933
Solanaceae	Lycium barbarum	1	gene-LOC132631575
Solanaceae	Solanum chilense	1	SOLCI000078300
Solanaceae	Solanum pennellii	1	gene-LOC107011170
Tamaricaceae	Reaumuria soongarica	1	gene_9698
Tamaricaceae	Tamarix chinensis	2	TC01G2861, TC06G1119
Zosteraceae	Zostera marina	1	Zosma05g22680.v3.1