Basic Information
Locus ID:
gene-LOC120108275
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
U4 U6.U5 tri-snRNP-associated protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001249F | 121134 | 121986 | - | gene-LOC120108275 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.34 | 17,279.00 Da | 45.02 | 88.62 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 27 | 141 | 1.3E-19 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 20 | 143 | 1.86E-30 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 1 | 145 | 2.2E-34 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 1 | 144 | 21.677914 | IPR028889 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22350.1 | Ubiquitin C-terminal hydrolases superfamily protein. | 0 |
| RefSeq | XP_038977798.1 | LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 2-like, partial [Phoenix dactylifera] | 0 |
| Q3TIX9 | Ubiquitin carboxyl-terminal hydrolase 39 OS=Mus musculus OX=10090 GN=Usp39 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B9A1V3 | LOW QUALITY PROTEIN: U4/U6.U5 tri-snRNP-associated protein 2-like OS=Phoenix dactylifera OX=42345 GN=LOC120108275 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120108275 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18793 |
| Tamaricaceae | Tamarix chinensis | 1 | TC08G0179 |