Basic Information
Locus ID:
gene-LOC120107855
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001044F | 60631 | 62953 | + | gene-LOC120107855 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 43,803.42 Da | 40.00 | 71.62 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 59 | 399 | 4.12795E-136 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 64 | 393 | 6.2E-70 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 62 | 404 | 1.33E-68 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 299 | 364 | 1.06E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 78 | 394 | 1.9E-101 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 298 | 364 | 1.9E-101 | IPR029070 |
| SMART | SM00636 | 2g34 | 61 | 393 | 2.4E-86 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 61 | 408 | 64.743446 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 168 | 176 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038977281.1 | nod factor hydrolase protein 1-like [Phoenix dactylifera] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8ZSQ4 | nod factor hydrolase protein 1-like OS=Phoenix dactylifera OX=42345 GN=LOC120107855 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology