Basic Information
Locus ID:
gene-LOC120107852
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001044F | 95043 | 97348 | + | gene-LOC120107852 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.49 | 43,932.66 Da | 38.18 | 73.04 | -0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 60 | 399 | 2.26473E-136 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 64 | 393 | 1.2E-72 | IPR001223 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 299 | 364 | 1.44E-13 | IPR029070 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 62 | 402 | 2.88E-70 | IPR017853 |
| Gene3D | G3DSA:3.10.50.10 | - | 298 | 364 | 1.7E-102 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 78 | 394 | 1.7E-102 | - |
| SMART | SM00636 | 2g34 | 61 | 393 | 9.4E-89 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 61 | 408 | 67.406525 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 168 | 176 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_038977277.1 | nod factor hydrolase protein 1-like [Phoenix dactylifera] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8ZV84 | nod factor hydrolase protein 1-like OS=Phoenix dactylifera OX=42345 GN=LOC120107852 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology