Basic Information
Locus ID:
gene-LOC120107480
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000880F | 110946 | 115181 | + | gene-LOC120107480 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 26,693.64 Da | 29.83 | 100.86 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 121 | 225 | 8.82649E-33 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 130 | 217 | 1.5E-18 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 2 | 56 | 1.7E-13 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 5 | 217 | 1.17E-39 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 74 | 1.7E-25 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 113 | 228 | 1.9E-26 | IPR027417 |
| SMART | SM00490 | helicmild6 | 154 | 224 | 7.6E-5 | IPR001650 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 133 | 233 | 14.786234 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 67 | 14.243799 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 13 | 21 | - | IPR000629 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_038976690.1 | ATP-dependent RNA helicase-like protein DB10 [Phoenix dactylifera] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZQZ0 | ATP-dependent RNA helicase-like protein DB10 OS=Phoenix dactylifera OX=42345 GN=LOC120107480 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology