Basic Information
Locus ID:
gene-LOC120107243
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000804F | 189715 | 205501 | + | gene-LOC120107243 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.53 | 56,056.27 Da | 41.68 | 90.35 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 210 | 246 | 0.032 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 28 | 367 | 1.83E-25 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 13 | 174 | 2.1E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 204 | 370 | 4.4E-11 | IPR015943 |
| SMART | SM00320 | WD40_4 | 261 | 297 | 81.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 20 | 55 | 39.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 93 | 133 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 319 | 354 | 390.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 207 | 246 | 0.4 | IPR001680 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 246 | 273 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 34 | 54 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 274 | 302 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 303 | 330 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 218 | 245 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 331 | 358 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 80 | 108 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 109 | 137 | 2.2E-98 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 359 | 384 | 2.2E-98 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.2 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_038976372.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X1 [Phoenix dactylifera] | 0 |
| A2X2K3 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica OX=39946 GN=OsI_006296 PE=2 SV=2 | 0 | |
| TrEMBL | A0A8B8ZSM9 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Phoenix dactylifera OX=42345 GN=LOC120107243 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology