Basic Information
Locus ID:
gene-LOC120106832
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
UBX domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000655F | 272652 | 273101 | - | gene-LOC120106832 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.92 | 17,233.25 Da | 39.98 | 76.58 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02958 | UAS | 57 | 148 | 4.70596E-33 | - |
| CDD | cd14273 | UBA_TAP-C_like | 22 | 48 | 9.05526E-6 | - |
| Pfam | PF13899 | Thioredoxin-like | 69 | 141 | 2.0E-6 | - |
| Pfam | PF14555 | UBA-like domain | 20 | 48 | 2.8E-7 | - |
| SUPERFAMILY | SSF52833 | Thioredoxin-like | 41 | 148 | 4.7E-23 | IPR036249 |
| Gene3D | G3DSA:3.40.30.10 | Glutaredoxin | 59 | 149 | 2.8E-23 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 8 | 50 | 2.1E-5 | - |
| SMART | SM00594 | 45neu3 | 45 | 148 | 1.1E-6 | IPR006577 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G14570.3 | UBX domain-containing protein. | 0 |
| RefSeq | XP_038975816.1 | plant UBX domain-containing protein 7-like [Phoenix dactylifera] | 0 |
| Q94JZ8 | Plant UBX domain-containing protein 7 OS=Arabidopsis thaliana OX=3702 GN=PUX7 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZNM5 | plant UBX domain-containing protein 7-like OS=Phoenix dactylifera OX=42345 GN=LOC120106832 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold021020G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC120106832 |
| Brassicaceae | Schrenkiella parvula | 4 | Sp6g06930.v2.2, Sp7g12220.v2.2, Sp7g12230.v2.2 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-6149 |