Basic Information
Locus ID:
gene-LOC120105697
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD domain, G-beta repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000343F | 258812 | 278906 | - | gene-LOC120105697 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 125,438.80 Da | 42.48 | 82.27 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 916 | 950 | 4.1E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 448 | 485 | 2.4E-4 | IPR001680 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 412 | 955 | 5.02E-44 | IPR011047 |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 974 | 1100 | 3.14E-6 | IPR011047 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 341 | 436 | 6.75E-8 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 767 | 1107 | 1.8E-29 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 316 | 538 | 1.1E-32 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 673 | 2.0E-9 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 9.3E-5 | IPR006594 |
| SMART | SM00668 | ctlh | 34 | 92 | 4.3E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 338 | 377 | 0.0027 | IPR001680 |
| SMART | SM00320 | WD40_4 | 577 | 617 | 0.37 | IPR001680 |
| SMART | SM00320 | WD40_4 | 487 | 528 | 8.8E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 531 | 574 | 140.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 444 | 485 | 8.8E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 438 | 56.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1000 | 1042 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 9.6E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 823 | 865 | 70.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 344 | 386 | 8.503359 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.071995 | IPR006594 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 953 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 959 | 13.215325 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 595 | 626 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 451 | 487 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.538395 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 937 | 951 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 472 | 486 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1118 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 743 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G16830.1 | TOPLESS-related 2. | 0 |
| RefSeq | XP_038974302.1 | protein TPR1-like isoform X1 [Phoenix dactylifera] | 0 |
| Q5NBT9 | Protein TPR1 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZLW3 | protein TPR1-like isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC120105697 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology