Basic Information
Locus ID:
gene-LOC120104821
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000117F | 816198 | 826307 | - | gene-LOC120104821 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 41,967.12 Da | 54.48 | 77.38 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 193 | 224 | 0.16 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 283 | 316 | 0.035 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 81 | 320 | 4.4E-30 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 15 | 380 | 4.3E-35 | IPR015943 |
| SMART | SM00320 | WD40_4 | 186 | 224 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 138 | 183 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 316 | 3.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 283 | 319 | 9.124694 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 283 | 319 | 10.876051 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 303 | 317 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 120 | 140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G12910.1 | Transducin/WD40 repeat-like superfamily protein. Encodes a protein with similarity to the petunia WD repeat protein an11. | 0 |
| RefSeq | XP_038972576.1 | WD repeat-containing protein LWD1-like [Phoenix dactylifera] | 0 |
| Q9LPV9 | WD repeat-containing protein LWD1 OS=Arabidopsis thaliana OX=3702 GN=LWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZH04 | WD repeat-containing protein LWD1-like OS=Phoenix dactylifera OX=42345 GN=LOC120104821 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology