Basic Information
Locus ID:
gene-LOC120104552
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 3808732 | 3809522 | - | gene-LOC120104552 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.74 | 27,579.71 Da | 67.59 | 81.84 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 197 | 241 | 1.2E-7 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 197 | 244 | 3.53E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 244 | 2.6E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 198 | 240 | 7.5E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 198 | 241 | 12.25323 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038971784.1 | uncharacterized protein LOC120104552 [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B8ZJ95 | uncharacterized protein LOC120104552 OS=Phoenix dactylifera OX=42345 GN=LOC120104552 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_07G002360 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC120104385, gene-LOC120104552 |