Basic Information
Locus ID:
gene-LOC120104412
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
endochitinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 5706300 | 5707814 | + | gene-LOC120104412 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 33,552.12 Da | 40.02 | 60.69 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 81 | 311 | 3.36644E-118 | - |
| CDD | cd00035 | ChtBD1 | 21 | 59 | 4.89308E-16 | - |
| Pfam | PF00182 | Chitinase class I | 80 | 311 | 3.2E-139 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 21 | 58 | 7.6E-14 | IPR001002 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 21 | 67 | 6.94E-13 | IPR036861 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 77 | 318 | 8.15E-113 | IPR023346 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 163 | 220 | 6.0E-125 | - |
| Gene3D | G3DSA:1.10.530.10 | - | 85 | 317 | 6.0E-125 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 19 | 61 | 4.0E-16 | IPR036861 |
| SMART | SM00270 | ChitinBD_3 | 21 | 58 | 1.1E-16 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 318 | 1.3E-128 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 19 | 60 | 10.975336 | IPR001002 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 98 | 120 | - | IPR000726 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 31 | 50 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 224 | 234 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 44 | 51 | 1.5E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 29 | 37 | 1.5E-5 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 37 | 44 | 1.5E-5 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_038971430.1 | chitinase 1-like [Phoenix dactylifera] | 0 |
| P93680 | Endochitinase OS=Persea americana OX=3435 GN=chi1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8B8ZBG8 | chitinase OS=Phoenix dactylifera OX=42345 GN=LOC120104412 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology