Basic Information
Locus ID:
gene-LOC120104346
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 6227484 | 6229241 | + | gene-LOC120104346 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.83 | 63,754.01 Da | 42.76 | 97.71 | -0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 474 | 497 | 0.18 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 500 | 519 | 0.0021 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 159 | 182 | 1.6 | IPR001611 |
| Pfam | PF12937 | F-box-like | 42 | 75 | 7.5E-7 | IPR001810 |
| Pfam | PF13516 | Leucine Rich repeat | 527 | 548 | 0.72 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 257 | 580 | 1.18E-35 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 31 | 79 | 1.31E-10 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 146 | 293 | 3.92E-17 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 342 | 585 | 1.8E-39 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 77 | 339 | 5.1E-38 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 41 | 76 | 1.7E-10 | - |
| SMART | SM00367 | LRR_CC_2 | 500 | 524 | 0.054 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 341 | 366 | 0.64 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 211 | 236 | 6.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 529 | 551 | 26.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 237 | 262 | 52.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 367 | 392 | 53.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 552 | 577 | 20.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 474 | 499 | 0.038 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 185 | 210 | 0.0024 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 313 | 338 | 36.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 159 | 184 | 3.1E-4 | IPR006553 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038971198.1 | EIN3-binding F-box protein 1-like [Phoenix dactylifera] | 0 |
| TrEMBL | A0A8B8ZIB4 | EIN3-binding F-box protein 1-like OS=Phoenix dactylifera OX=42345 GN=LOC120104346 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology