Basic Information
Locus ID:
gene-LOC120104334
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
rRNA N-glycosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr17 | 2525408 | 2525806 | - | gene-LOC120104334 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 15,048.94 Da | 52.19 | 90.98 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 6 | 122 | 4.3E-26 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 7 | 126 | 3.8E-29 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 1 | 82 | 3.6E-23 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 72 | 92 | 3.2E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 42 | 56 | 3.2E-8 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 106 | 123 | 3.2E-8 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_038971184.1 | ribosome-inactivating protein charybdin-like [Phoenix dactylifera] | 0 |
| P28590 | Abrin-c OS=Abrus precatorius OX=3816 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZHB3 | rRNA N-glycosylase OS=Phoenix dactylifera OX=42345 GN=LOC120104334 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology