Basic Information
Locus ID:
gene-LOC120104236
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
protein UNUSUAL FLORAL
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 5217108 | 5218298 | + | gene-LOC120104236 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.30 | 43,024.64 Da | 63.98 | 88.08 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 6 | 45 | 1.0E-5 | IPR001810 |
| SUPERFAMILY | SSF117281 | Kelch motif | 84 | 359 | 4.45E-13 | IPR015915 |
| SUPERFAMILY | SSF81383 | F-box domain | 5 | 78 | 1.57E-12 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 2 | 48 | 2.2E-7 | - |
| Gene3D | G3DSA:2.120.10.80 | - | 83 | 371 | 3.4E-7 | IPR015915 |
| SMART | SM00256 | fbox_2 | 9 | 49 | 5.2E-7 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 3 | 49 | 10.875178 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G30950.1 | F-box family protein. Required for the proper identity of the floral meristem. Involved in establishing the whorled pattern of floral organs, in the control of specification of the floral meristem, and in the activation of APETALA3 and PISTILLATA. UFO is found at the AP3 promoter in a LFY-dependent manner, suggesting that it works with LFY to regulate AP3 expression. UFO may also promote the ubiquitylation of LFY. | 0 |
| RefSeq | XP_038970991.1 | protein ABERRANT PANICLE ORGANIZATION 1-like [Phoenix dactylifera] | 0 |
| B8B183 | Protein ABERRANT PANICLE ORGANIZATION 1 OS=Oryza sativa subsp. indica OX=39946 GN=APO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8ZA94 | protein ABERRANT PANICLE ORGANIZATION 1-like OS=Phoenix dactylifera OX=42345 GN=LOC120104236 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg20934 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_5037 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah007976 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g086600 |
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg19250 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5504 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00006812 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl23242, Sgl28312 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011463, gene:ENSEOMG00000027763 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.4AG0019130 |
| Apiaceae | Apium graveolens | 1 | Ag9G02528 |
| Arecaceae | Cocos nucifera | 1 | scaffold045712G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103721086, gene-LOC120104236 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G19696 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G30950.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10009319m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g26810.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB07g019740.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0082 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G0100 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno17g03310 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g23630 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG12.331 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00012900 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.2587, BH06.2388, CH06.2605 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0547510, gene-QOZ80_6BG0501140 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0738310.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_036336 |
| Poaceae | Oryza coarctata | 2 | Oco11G014780, Oco12G014900 |
| Poaceae | Oryza sativa | 2 | LOC_Os06g35740.1, LOC_Os06g45460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G219400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G031510, Chr05G009350, Chr10G019810 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G816900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG067090, gene_TRIDC7BG060970 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G481600.1, TraesCS7B02G384000.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb274390_P001, Zm00001eb389810_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-40506, nbis-gene-55955, nbis-gene-9812 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g33222 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG01.219, evm.TU.LG04.533 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g08390 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.1524 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-26216 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-15057 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-4352 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000008l.324 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-17580 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-9640 |
| Salicaceae | Populus euphratica | 2 | populus_peu02974, populus_peu33854 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132625109 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107010731, gene-LOC107019684 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11695 |
| Zosteraceae | Zostera marina | 1 | Zosma03g22530.v3.1 |