Basic Information
Locus ID:
gene-LOC120103868
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
DEAD-box ATP-dependent RNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold001951F | 259 | 7390 | - | gene-LOC120103868 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 57,902.96 Da | 78.97 | 61.07 | -0.87 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 52 | 1.3552E-4 | IPR001202 |
| Pfam | PF00397 | WW domain | 22 | 52 | 1.0E-6 | IPR001202 |
| SUPERFAMILY | SSF51045 | WW domain | 17 | 56 | 9.06E-9 | IPR036020 |
| Gene3D | G3DSA:2.20.70.10 | - | 17 | 57 | 6.4E-6 | - |
| SMART | SM00456 | ww_5 | 21 | 54 | 1.1E-6 | IPR001202 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3687 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 332 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.2 | - | 0 |
| RefSeq | XP_038978927.1 | DEAD-box ATP-dependent RNA helicase 40-like [Phoenix dactylifera] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B8ZZX0 | DEAD-box ATP-dependent RNA helicase 40-like OS=Phoenix dactylifera OX=42345 GN=LOC120103868 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology