Basic Information
Locus ID:
gene-LOC120103712
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000382F | 205989 | 218028 | - | gene-LOC120103712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.51 | 25,861.97 Da | 41.30 | 93.17 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 15 | 95 | 2.47655E-53 | - |
| Pfam | PF07650 | KH domain | 20 | 93 | 1.5E-12 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 106 | 193 | 8.5E-22 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 93 | 196 | 4.58E-25 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 10 | 99 | 3.4E-26 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 93 | 224 | 3.9E-63 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 91 | 4.4E-49 | IPR015946 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 8 | 215 | 1.4E-69 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 21 | 92 | 11.351615 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 152 | 188 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_038974524.1 | 40S ribosomal protein S3-3 isoform X1 [Phoenix dactylifera] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8IZW7 | 40S ribosomal protein S3-3 isoform X1 OS=Phoenix dactylifera OX=42345 GN=LOC103696489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology