Basic Information
Locus ID:
gene-LOC114078477
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Autophagy-related protein 18a-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr8 | 62541761 | 62545987 | + | gene-LOC114078477 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 14,893.81 Da | 35.34 | 92.46 | 0.08 |
Protein Domain:
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.3 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_027775212.1 | autophagy-related protein 18a-like [Solanum pennellii] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0V0HPG2 | Putative autophagy-related protein 18a-like (Fragment) OS=Solanum chacoense OX=4108 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.2HG0113920.1, HORVU.MOREX.r3.2HG0113930.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G245700 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC2BG016800 |
| Poaceae | Triticum aestivum | 6 | TraesCS2A02G115200.1, TraesCS2B02G134400.1 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114078477 |