Basic Information
Locus ID:
gene-LOC114077490
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Replication factor-A C terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr6 | 28531263 | 28532696 | - | gene-LOC114077490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 31,116.05 Da | 33.04 | 86.78 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04476 | RPA1_DBD_C | 29 | 193 | 7.18158E-30 | IPR013955 |
| Pfam | PF08646 | Replication factor-A C terminal domain | 47 | 162 | 2.6E-18 | IPR013955 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 23 | 193 | 1.15E-27 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 13 | 190 | 2.8E-36 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 214 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027773223.1 | uncharacterized protein LOC114077490 [Solanum pennellii] | 0 |
| TrEMBL | A0A3Q7GU07 | ATP-dependent DNA helicase OS=Solanum lycopersicum OX=4081 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology