Basic Information
Locus ID:
gene-LOC114077224
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr5 | 1127815 | 1130331 | - | gene-LOC114077224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.50 | 54,228.76 Da | 45.80 | 101.23 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 10 | 47 | 4.3E-7 | IPR001810 |
| SUPERFAMILY | SSF52047 | RNI-like | 94 | 321 | 2.51E-10 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 10 | 55 | 3.53E-9 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 70 | 370 | 1.3E-8 | IPR032675 |
| SMART | SM00256 | fbox_2 | 13 | 53 | 2.4E-4 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 7 | 55 | 10.080346 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027772751.1 | uncharacterized protein LOC114077224 [Solanum pennellii] | 0 |
| TrEMBL | A0A494G931 | F-box domain-containing protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132642694 |
| Solanaceae | Solanum chilense | 1 | SOLCI005516500 |
| Solanaceae | Solanum pennellii | 2 | gene-LOC107019930, gene-LOC114077224 |