Basic Information
Locus ID:
gene-LOC114076929
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Short Name:
UBC17
Description:
protein polyubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 76793950 | 76798442 | - | gene-LOC114076929 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 30,151.73 Da | 68.30 | 77.02 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 128 | 251 | 3.2E-24 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 116 | 236 | 7.12E-26 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 123 | 256 | 9.8E-29 | IPR016135 |
| SMART | SM00212 | ubc_7 | 127 | 261 | 2.3E-14 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 124 | 262 | 24.766422 | IPR000608 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G75440.1 | ubiquitin-conjugating enzyme 16. | 0 |
| RefSeq | XP_027772432.1 | probable ubiquitin-conjugating enzyme E2 16 [Solanum pennellii] | 0 |
| Q9FWT2 | Probable ubiquitin-conjugating enzyme E2 16 OS=Arabidopsis thaliana OX=3702 GN=UBC16 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1S3YK88 | serpin-ZX-like isoform X1 OS=Nicotiana tabacum OX=4097 GN=LOC107777178 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for gene-LOC114076929.