Basic Information
Locus ID:
gene-LOC114076875
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Zinc finger, GRF-type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 30708656 | 30782899 | + | gene-LOC114076875 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.13 | 41,027.32 Da | 42.84 | 59.86 | -0.97 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF06839 | GRF zinc finger | 183 | 224 | 6.8E-10 | IPR010666 |
| SUPERFAMILY | SSF57756 | Retrovirus zinc finger-like domains | 99 | 121 | 3.66E-5 | IPR036875 |
| Gene3D | G3DSA:4.10.60.10 | - | 95 | 129 | 2.7E-5 | - |
| ProSiteProfiles | PS50158 | Zinc finger CCHC-type profile. | 101 | 116 | 9.586787 | IPR001878 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 82 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 137 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 115 | 138 | - | - |
| Coils | Coil | Coil | 235 | 262 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027772376.1 | uncharacterized protein LOC114076875 [Solanum pennellii] | 0 |
| TrEMBL | A0A6N2CKG4 | zf-GRF domain-containing protein (Fragment) OS=Solanum chilense OX=4083 GN=EJD97_020346 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 6 | gene-LOC132602543, gene-LOC132613424, gene-LOC132619278 ... |
| Solanaceae | Solanum chilense | 2 | SOLCI000728800, SOLCI005741500 |
| Solanaceae | Solanum pennellii | 10 | gene-LOC107028148, gene-LOC114075058, gene-LOC114076072 ... |