Basic Information
Locus ID:
gene-LOC114076095
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
histone H2A-K119 monoubiquitination
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 40020126 | 40025609 | - | gene-LOC114076095 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 33,079.21 Da | 73.90 | 71.52 | -0.89 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 17 | 57 | 2.6E-5 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 12 | 71 | 5.7E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 6 | 111 | 1.1E-11 | IPR013083 |
| SMART | SM00184 | ring_2 | 17 | 57 | 9.7E-5 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 17 | 58 | 10.940213 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 33 | 42 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 68 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 113 | - | - |
| Coils | Coil | Coil | 66 | 115 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G06770.3 | - | 0 |
| RefSeq | XP_027770372.1 | E3 ubiquitin protein ligase DRIP1-like isoform X1 [Solanum pennellii] | 0 |
| Q9M9Y4 | E3 ubiquitin protein ligase DRIP1 OS=Arabidopsis thaliana OX=3702 GN=DRIP1 PE=1 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 2 | gene-LOC132610900, gene-LOC132610901 |
| Solanaceae | Solanum chilense | 1 | SOLCI001357700 |
| Solanaceae | Solanum pennellii | 3 | gene-LOC107030463, gene-LOC107030865, gene-LOC114076095 |