Basic Information
Locus ID:
gene-LOC114075577
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 107502891 | 107503760 | - | gene-LOC114075577 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.82 | 33,042.23 Da | 47.07 | 84.36 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 241 | 285 | 1.9E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 242 | 288 | 8.97E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 200 | 289 | 4.9E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 243 | 285 | 11.264779 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G12140.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_027769754.1 | uncharacterized protein LOC114075577 [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644723 |
| Solanaceae | Solanum chilense | 1 | SOLCI007334600 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075577 |