Basic Information
Locus ID:
gene-LOC114075312
Species & Taxonomic ID:
Solanum pennellii & 28526
Genome Assembly:
GCF_001406875.1
Description:
Ring finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr12 | 53738650 | 53739570 | - | gene-LOC114075312 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.25 | 30,777.21 Da | 76.66 | 77.29 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01485 | IBR domain, a half RING-finger domain | 167 | 213 | 3.3E-6 | IPR002867 |
| SUPERFAMILY | SSF57850 | RING/U-box | 79 | 145 | 4.12E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 163 | 7.5E-11 | IPR013083 |
| ProSiteProfiles | PS51873 | TRIAD supradomain profile. | 80 | 266 | 14.472633 | IPR044066 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 84 | 132 | 10.010774 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 103 | 112 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 266 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 266 | - | - |
| Coils | Coil | Coil | 231 | 265 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_027769596.1 | LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase rbrA [Solanum pennellii] | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631546 |
| Solanaceae | Solanum chilense | 1 | SOLCI006550100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC114075312 |