Basic Information
Locus ID:
gene-LOC113463038
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr11 | 5744152 | 5748606 | + | gene-LOC113463038 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 20,400.21 Da | 70.58 | 47.22 | -1.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 4.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 119 | 172 | 4.2E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 96 | 173 | 5.1E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 125 | 165 | 1.6E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 125 | 166 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 25 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 67 | 83 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_026662324.2 | E3 ubiquitin-protein ligase AIRP1-like [Phoenix dactylifera] | 0 |
| Q93ZF6 | E3 ubiquitin-protein ligase AIRP1 OS=Arabidopsis thaliana OX=3702 GN=AIRP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J761 | E3 ubiquitin-protein ligase AIRP1-like OS=Phoenix dactylifera OX=42345 GN=LOC113463038 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | scaffold019103G000030 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC113463038 |