Basic Information
Locus ID:
gene-LOC113462358
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
LysM domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr1 | 16955520 | 16967390 | - | gene-LOC113462358 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.09 | 69,046.56 Da | 44.09 | 88.51 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 189 | 232 | 3.44967E-6 | IPR018392 |
| Pfam | PF00069 | Protein kinase domain | 361 | 609 | 6.0E-38 | IPR000719 |
| Pfam | PF01476 | LysM domain | 190 | 233 | 2.6E-6 | IPR018392 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 330 | 612 | 2.67E-65 | IPR011009 |
| SUPERFAMILY | SSF54106 | LysM domain | 188 | 233 | 2.22E-5 | IPR036779 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 312 | 408 | 1.2E-14 | - |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 176 | 243 | 6.3E-8 | IPR036779 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 409 | 621 | 4.1E-53 | - |
| SMART | SM00257 | LysM_2 | 123 | 169 | 0.011 | IPR018392 |
| SMART | SM00257 | LysM_2 | 189 | 233 | 9.9E-5 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 188 | 232 | 10.83509 | IPR018392 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 334 | 621 | 33.488407 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 264 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G33580.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_038984152.1 | protein LYK5-like [Phoenix dactylifera] | 0 |
| O22808 | Protein LYK5 OS=Arabidopsis thaliana OX=3702 GN=LYK5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B9AJG4 | protein LYK5-like OS=Phoenix dactylifera OX=42345 GN=LOC113462358 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology