Basic Information
Locus ID:
gene-LOC113460903
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
Anaphase-promoting complex subunit cdc20
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000089F | 996681 | 1003232 | + | gene-LOC113460903 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.90 | 53,478.48 Da | 54.73 | 83.80 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 169 | 226 | 1.7E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 389 | 424 | 0.052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 249 | 285 | 4.0E-6 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 425 | 3.3E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 76 | 427 | 2.7E-113 | IPR015943 |
| SMART | SM00320 | WD40_4 | 385 | 424 | 7.1E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 246 | 285 | 1.4E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 162 | 201 | 2.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 204 | 242 | 3.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 297 | 339 | 0.03 | IPR001680 |
| SMART | SM00320 | WD40_4 | 342 | 382 | 280.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 392 | 425 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 253 | 287 | 11.207411 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 392 | 425 | 10.642123 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 169 | 201 | 9.54651 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 253 | 294 | 13.582925 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 169 | 210 | 12.613797 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 411 | 425 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 272 | 286 | - | IPR019775 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33260.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.2) | 0 |
| RefSeq | XP_026662933.1 | cell division cycle 20.2, cofactor of APC complex-like [Phoenix dactylifera] | 0 |
| Q9S7I8 | Cell division cycle 20.2, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8B8J7V9 | cell division cycle 20.2, cofactor of APC complex-like OS=Phoenix dactylifera OX=42345 GN=LOC113460903 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology