Basic Information
Locus ID:
gene-LOC108511340
Species & Taxonomic ID:
Phoenix dactylifera & 42345
Genome Assembly:
GCF_009389715.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| scaffold000852F | 123104 | 124264 | - | gene-LOC108511340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.51 | 29,428.32 Da | 68.15 | 80.47 | -0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 208 | 250 | 3.12845E-18 | - |
| Pfam | PF13639 | Ring finger domain | 208 | 250 | 1.8E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 195 | 255 | 8.01E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 175 | 255 | 3.1E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 209 | 249 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 209 | 250 | 12.946621 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41350.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_017698444.1 | E3 ubiquitin-protein ligase DZIP3-like [Phoenix dactylifera] | 0 |
| Q4KLR8 | E3 ubiquitin-protein ligase ZNRF3 OS=Xenopus laevis OX=8355 GN=znrf3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8B7MUZ4 | E3 ubiquitin-protein ligase DZIP3-like OS=Phoenix dactylifera OX=42345 GN=LOC108511340 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_01G015400, COCNU_01G015420 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC108511340, gene-LOC120106529 |